PlotPostVsRawFC: Plot Posterior FC vs FC

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/PlotPostVsRawFC.R

Description

'PlotPostVsRawFC' helps the users visualize the posterior FC vs FC in a two condition study.

Usage

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PlotPostVsRawFC(EBOut, FCOut)

Arguments

EBOut

The output of EBMultiTest function.

FCOut

The output of PostFC function.

Value

A figure shows fold change vs posterior fold change.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

PostFC

Examples

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data(GeneMat)
GeneMat.small = GeneMat[c(500:600),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
FC = PostFC(EBOut)
PlotPostVsRawFC(EBOut,FC)

EBSeq documentation built on Nov. 17, 2017, 9:55 a.m.