Description Usage Arguments Value Author(s) References See Also Examples
View source: R/PlotPostVsRawFC.R
'PlotPostVsRawFC' helps the users visualize the posterior FC vs FC in a two condition study.
1 | PlotPostVsRawFC(EBOut, FCOut)
|
EBOut |
The output of EBMultiTest function. |
FCOut |
The output of PostFC function. |
A figure shows fold change vs posterior fold change.
Ning Leng
Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)
PostFC
1 2 3 4 5 6 7 8 | data(GeneMat)
GeneMat.small = GeneMat[c(500:600),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
Conditions = as.factor(rep(c("C1","C2"), each=5)),
sizeFactors = Sizes, maxround = 5)
FC = PostFC(EBOut)
PlotPostVsRawFC(EBOut,FC)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.