PlotPostVsRawFC: Plot Posterior FC vs FC

Description Usage Arguments Value Author(s) References See Also Examples

Description

'PlotPostVsRawFC' helps the users visualize the posterior FC vs FC in a two condition study.

Usage

1
PlotPostVsRawFC(EBOut, FCOut)

Arguments

EBOut

The output of EBMultiTest function.

FCOut

The output of PostFC function.

Value

A figure shows fold change vs posterior fold change.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

PostFC

Examples

1
2
3
4
5
6
7
8
data(GeneMat)
GeneMat.small = GeneMat[c(500:600),]
Sizes = MedianNorm(GeneMat.small)
EBOut = EBTest(Data = GeneMat.small,
	Conditions = as.factor(rep(c("C1","C2"), each=5)),
	sizeFactors = Sizes, maxround = 5)
FC = PostFC(EBOut)
PlotPostVsRawFC(EBOut,FC)


Search within the EBSeq package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.