'QQP' gives the Quantile-Quantile Plot to compare the empirical q's and simulated q's from fitted beta distribution.
QQP(EBOut, GeneLevel = F)
The output of EBTest or EBMultiTest.
Indicate whether the results are from data at gene level.
For data with n1 conditions and n2 uncertainty groups, n1*n2 plots will be generated. Each plot represents a subset of the data.
Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)
EBTest, EBMultiTest, DenNHist
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