'DenNHist' gives the density plot that compares the empirical q's and the simulated q's from the fitted beta distribution.
DenNHist(EBOut, GeneLevel = F)
The output of EBTest or EBMultiTest.
Indicate whether the results are from data at gene level.
For data with n1 conditions and n2 uncertainty groups, n1*n2 plots will be generated. Each plot represents a subset of the data. The empirical estimation of q's will be represented as blue histograms and the density of the fitted beta distribution will be represented as the green line.
Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)
beta.mom, QQP, EBTest, EBMultiTest
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