f0: The Prior Predictive Distribution of being EE

In EBSeq: An R package for gene and isoform differential expression analysis of RNA-seq data

Description

'f0' gives the Prior Predictive Distribution of being EE.

Usage

f0(Input, AlphaIn, BetaIn, EmpiricalR, NumOfGroups, log)

Arguments

Input	Expression Values.
AlphaIn, BetaIn, EmpiricalR	The parameters estimated from last iteration of EM.
NumOfGroups	How many transcripts within each Ng group.
log	If true, will give the log of the output.

Value

The function will return the prior predictive distribution values of being EE.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

See Also

f1

Examples

#
#f0(matrix(rnorm(100,100,1),ncol=10), .5, .6,
#	matrix(rnorm(100,200,1),ncol=10), 100, TRUE)

EBSeq documentation built on Nov. 8, 2020, 6:52 p.m.