QuantileNorm: Quantile Normalization

Description Usage Arguments Details Value Author(s) References See Also Examples

Description

'QuantileNorm' gives the quantile normalization.

Usage

1
QuantileNorm(Data, Quantile)

Arguments

Data

The data matrix with transcripts in rows and lanes in columns.

Quantile

The quantile the user wishs to use. Should be a number between 0 and 1.

Details

Use a quantile point to normalize the data.

Value

The function will return a vector contains the normalization factor for each lane.

Author(s)

Ning Leng

References

Bullard, James H., et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics 11.1 (2010): 94.

See Also

MedianNorm

Examples

1
2
3
4
5
data(GeneMat)
Sizes = QuantileNorm(GeneMat,.75)
#EBOut = EBTest(Data = GeneMat,
#	Conditions = as.factor(rep(c("C1","C2"), each=5)),
#	sizeFactors = Sizes, maxround = 5)


Search within the EBSeq package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.