Quantile Normalization

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Description

'QuantileNorm' gives the quantile normalization.

Usage

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QuantileNorm(Data, Quantile)

Arguments

Data

The data matrix with transcripts in rows and lanes in columns.

Quantile

The quantile the user wishs to use. Should be a number between 0 and 1.

Details

Use a quantile point to normalize the data.

Value

The function will return a vector contains the normalization factor for each lane.

Author(s)

Ning Leng

References

Bullard, James H., et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics 11.1 (2010): 94.

See Also

MedianNorm

Examples

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data(GeneMat)
Sizes = QuantileNorm(GeneMat,.75)
#EBOut = EBTest(Data = GeneMat,
#	Conditions = as.factor(rep(c("C1","C2"), each=5)),
#	sizeFactors = Sizes, maxround = 5)

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