Description Usage Arguments Value

View source: R/StatisticTest.R

Stat.diff.meth

1 2 | ```
Stat.diff.meth(meth, groups, group1, group2, test = t.test,
min.samples = 5, percentage = 0.2, Top.m = NULL)
``` |

`meth` |
A matrix contain DNA methylation data. |

`groups` |
A vector of category of samples. |

`group1` |
Group 1 label in groups vector |

`group2` |
Group 2 label in groups vector |

`test` |
A function specify which statistic test will be used. |

`min.samples` |
Minimun number of samples to use in the analysis. Default 5. If you have 10 samples in one group, percentage is 0.2 this will give 2 samples in the lower quintile, but then 5 will be used. |

`percentage` |
A number specify the percentage of normal and tumor samples used in the test. |

`Top.m` |
A logic. If to identify hypomethylated probe Top.m should be FALSE. hypermethylated probe is TRUE. |

Statistic test results to identify differentially methylated probes.

ELMER documentation built on Nov. 22, 2018, 6:07 p.m.

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