get.tabs: Creating matrix for MR TF heatmap

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

Code used to create matrix for MR TF heatmap

Usage

get.tabs(dir, classification = "family", top = TRUE)

Arguments

dir	Vector ofr directory with results
classification	Consider family or subfamily
top	Consider only top 1 within each (sub)family

Examples

## Not run: 
elmer.results <- dirname(
dir(path = "analysis",
   pattern = "*.hypo.pairs.significant.csv",
   recursive = T,
   full.names = T,
   all.files = T))
tabs <- get.tabs(dir = elmer.results, classification = "subfamily")

## End(Not run)

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.