createSummaryDocument: Create summary document for TCGA.pipe function

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

This function will create a text file with the date of the last run, which aanalysis were performed, the values of the arguments so the user can keep track

Usage

createSummaryDocument(
  analysis = "all",
  argument.values = "defaults",
  genome = NULL,
  mae.path = NULL,
  mode = NULL,
  direction = NULL,
  group.col = NULL,
  group1 = NULL,
  group2 = NULL,
  results.path = NULL
)

Arguments

analysis	Which analysis were performed
argument.values	Other argument values changed
genome	Genome of reference hg38 and hg19
mae.path	Where mae is stored
mode	Mode "supervised" or "unsupervised" used in the analysis
direction	Hypo or hyper direction
group.col	Group col
group1	Group 1
group2	Group 2
results.path	Path where the results were saved

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.