createSummaryDocument: Create summary document for TCGA.pipe function

Description Usage Arguments

View source: R/TCGA_pipe.R

Description

This function will create a text file with the date of the last run, which aanalysis were performed, the values of the arguments so the user can keep track

Usage

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createSummaryDocument(analysis = "all", argument.values = "defaults",
  genome = NULL, mae.path = NULL, mode = NULL, direction = NULL,
  group.col = NULL, group1 = NULL, group2 = NULL,
  results.path = NULL)

Arguments

analysis

Which analysis were performed

argument.values

Other argument values changed

genome

Genome of reference hg38 and hg19

mae.path

Where mae is stored

mode

Mode "supervised" or "unsupervised" used in the analysis

direction

Hypo or hyper direction

group.col

Group col

group1

Group 1

group2

Group 2

results.path

Path where the results were saved


ELMER documentation built on Nov. 1, 2018, 2:13 a.m.