createBigWigDNAmetArray: Create a bigwig file for IGV visualization of DNA methylation...

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

Create a bigwig for IGV visualization of DNA methylation data (Array)

Usage

createBigWigDNAmetArray(
  data = NULL,
  genome = "hg38",
  met.platform = "450K",
  track.names = NULL,
  dir = "IGV_tracks"
)

Arguments

data	A matrix
genome	Which genome build will be used: hg38 (default) or hg19.
met.platform	DNA methyaltion platform to retrieve data from: EPIC or 450K (default)
track.names	Provide a list of track names (.bw) otherwise the deault is the will be samples.bw
dir	Which directory files will be saved

Author(s)

Tiago Chedraoui Silva (tiagochst at gmail.com)

Examples

 ## Not run:             
 data <- assay(getMet(ELMER:::getdata("elmer.data.example")))
 createBigWigDNAmetArray(data = data, met.platform = "450K", genome = "hg38")
 
## End(Not run)

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.