createTSVTemplates: Create examples files for Sample mapping and information used...

In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes

Description

This function will receive the DNA methylation and gene expression matrix and will create some examples of table for the argument colData and sampleMap used in ceeateMae function.

Usage

createTSVTemplates(met, exp)

Arguments

met	DNA methylation matrix or Summarized Experiment
exp	Gene expression matrix or Summarized Experiment

Examples

gene.exp <- S4Vectors::DataFrame(sample1.exp = c("ENSG00000141510"=2.3,"ENSG00000171862"=5.4),
                  sample2.exp = c("ENSG00000141510"=1.6,"ENSG00000171862"=2.3))
dna.met <- S4Vectors::DataFrame(sample1.met = c("cg14324200"=0.5,"cg23867494"=0.1),
                       sample2.met =  c("cg14324200"=0.3,"cg23867494"=0.9))
createTSVTemplates(met = dna.met, exp = gene.exp)                       

ELMER documentation built on Nov. 8, 2020, 4:59 p.m.