getRNAseq: getRNAseq to download all RNAseq data for a certain cancer...

Description Usage Arguments Value

View source: R/FetchTCGA.R

Description

getRNAseq is a function to download RNAseq data for all samples of a certain cancer type from TCGA

Usage

1
getRNAseq(disease, basedir = "./Data", genome = "hg38")

Arguments

disease

A character specifies disease in TCGA such as BLCA

basedir

Download all RNA seq level 3 data for the specified disease.

genome

Data aligned against which genome of reference. Options: "hg19", "hg38" (default)

Value

Download all RNA seq level 3 data for the specified disease.


ELMER documentation built on Nov. 1, 2018, 2:13 a.m.