getRNAseq: getRNAseq to download all RNAseq data for a certain cancer...
In ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
Description
Usage
Arguments
Value
Description
getRNAseq is a function to download RNAseq data for all samples of a certain cancer type from TCGA
Usage
1
getRNAseq(disease, basedir = "./Data", genome = "hg38")
Arguments
disease
A character specifies disease in TCGA such as BLCA
basedir
Download all RNA seq level 3 data for the specified disease.
genome
Data aligned against which genome of reference. Options: "hg19", "hg38" (default)
Value
Download all RNA seq level 3 data for the specified disease.
ELMER documentation built on Nov. 8, 2020, 4:59 p.m.
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Description Usage Arguments Value
Description
getRNAseq is a function to download RNAseq data for all samples of a certain cancer type from TCGA
Usage
1 | getRNAseq(disease, basedir = "./Data", genome = "hg38")
|
Arguments
disease |
A character specifies disease in TCGA such as BLCA |
basedir |
Download all RNA seq level 3 data for the specified disease. |
genome |
Data aligned against which genome of reference. Options: "hg19", "hg38" (default) |
Value
Download all RNA seq level 3 data for the specified disease.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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