API for GeneAccord
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
| Global functions | |
|---|---|
| GeneAccord | Man page Source code |
| all_genes_tbl | Man page |
| avg_rates_m | Man page |
| build_null_test_statistic | Man page Source code |
| clone_tbl_all_pats_all_trees | Man page |
| compute_rates_clon_excl | Man page Source code |
| compute_test_stat_avg_rate | Man page Source code |
| convert_ensembl_to_reactome_pw_tbl | Man page Source code |
| create_ensembl_gene_tbl_hg | Man page Source code |
| create_tbl_ent_clones | Man page Source code |
| create_tbl_tree_collection | Man page Source code |
| ecdf_list | Man page |
| ecdf_lr_test_clon_excl_avg_rate | Man page Source code |
| ensembl_to_hgnc | Man page Source code |
| ensembl_to_reactome | Man page Source code |
| ensg_reactome_path_map | Man page |
| ensmusg_reactome_path_map | Man page |
| extract_num_clones_tbl | Man page Source code |
| generate_ecdf_test_stat | Man page Source code |
| generate_test_stat_hist | Man page Source code |
| get_hist_clon_excl | Man page Source code |
| get_hist_clon_excl_this_pat_this_pair | Man page Source code |
| get_rate_diff_branch_ent_pair | Man page Source code |
| heatmap_clones_gene_pat | Man page Source code |
| hgnc_to_ensembl | Man page Source code |
| is_diff_branch_ent_pair | Man page Source code |
| list_of_clon_excl_all_pats | Man page |
| list_of_num_trees_all_pats | Man page |
| map_pairs_to_hgnc_symbols | Man page Source code |
| merge_clones_identical_ents | Man page Source code |
| pairs_in_patients_hist | Man page Source code |
| plot_ecdf_test_stat | Man page Source code |
| plot_rates_clon_excl | Man page Source code |
| take_pairs_and_get_patients | Man page Source code |
| vis_pval_distr_num_pat | Man page Source code |
| write_res_pairs_to_disk | Man page Source code |
