all_genes_tbl: Different gene id's and their chromosomal location.
In GeneAccord: Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Description
Usage
Format
Source
Description
This is a tibble that contains mappings between different gene
identifiers. It can be created with the
function create_ensembl_gene_tbl_hg. These are the
human genes from the human genome
version hg19/GRCh37, and Ensembl Genes version 88.
Usage
1
Format
A tibble with 41'393 rows and seven variables:
- ensembl_gene_id
the Ensembl gene id as a character
- hgnc_symbol
the HGNC gene symbol as a character
- entrezgene
the Entrez gene id as an integer
- uniprotswissprot
the UniProtKB/Swiss-Prot gene id's as
a character
- chromosome_name
the name of the chromosome where the
gene is located as a character,
e.g. "3" for chromosome three
- start_position
the nucleotide start position
of the gene as an integer
- end_position
the nucleotide end position of
the gene as an integer
Source
The tibble can be generated with
create_ensembl_gene_tbl_hg(),
which uses the R-package
biomaRt and the Ensembl data base www.ensembl.org.
GeneAccord documentation built on Nov. 8, 2020, 8:04 p.m.
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Description Usage Format Source
Description
This is a tibble that contains mappings between different gene
identifiers. It can be created with the
function create_ensembl_gene_tbl_hg. These are the
human genes from the human genome
version hg19/GRCh37, and Ensembl Genes version 88.
Usage
1 |
Format
A tibble with 41'393 rows and seven variables:
- ensembl_gene_id
the Ensembl gene id as a character
- hgnc_symbol
the HGNC gene symbol as a character
- entrezgene
the Entrez gene id as an integer
- uniprotswissprot
the UniProtKB/Swiss-Prot gene id's as a character
- chromosome_name
the name of the chromosome where the gene is located as a character, e.g. "3" for chromosome three
- start_position
the nucleotide start position of the gene as an integer
- end_position
the nucleotide end position of the gene as an integer
Source
The tibble can be generated with
create_ensembl_gene_tbl_hg(),
which uses the R-package
biomaRt and the Ensembl data base www.ensembl.org.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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