clone_tbl_all_pats_all_trees: The tibble with gene-to-clone assignments from all patients...
In GeneAccord: Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients
Description
Usage
Format
Source
Description
This is a tibble that contains the information, which
gene is mutated in which clone from which patient.
Usage
1
Format
A tibble containing the following columns:
- file_name
the name of the csv-file from which the data was read
- patient_id
the patient identifier
- altered_entity
ensembl gene identifier of the mutated gene
- clone1
the indication whether the current gene is
mutated in this clone
- clone2
the indication whether the current gene is
mutated in this clone
- clone3
the indication whether the current gene is
mutated in this clone
- clone4
the indication whether the current gene is
mutated in this clone
- clone5
the indication whether the current gene is
mutated in this clone
- clone6
the indication whether the current gene is
mutated in this clone
- clone7
the indication whether the current gene is
mutated in this clone
- tree_id
the identifier that tells from which tree
this gene-to-clone assignment comes
Source
The tibble can be generated for each patient separately
with create_tbl_tree_collection as
demonstrated in the vignette.
GeneAccord documentation built on Nov. 8, 2020, 8:04 p.m.
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Description Usage Format Source
Description
This is a tibble that contains the information, which gene is mutated in which clone from which patient.
Usage
1 |
Format
A tibble containing the following columns:
- file_name
the name of the csv-file from which the data was read
- patient_id
the patient identifier
- altered_entity
ensembl gene identifier of the mutated gene
- clone1
the indication whether the current gene is mutated in this clone
- clone2
the indication whether the current gene is mutated in this clone
- clone3
the indication whether the current gene is mutated in this clone
- clone4
the indication whether the current gene is mutated in this clone
- clone5
the indication whether the current gene is mutated in this clone
- clone6
the indication whether the current gene is mutated in this clone
- clone7
the indication whether the current gene is mutated in this clone
- tree_id
the identifier that tells from which tree this gene-to-clone assignment comes
Source
The tibble can be generated for each patient separately
with create_tbl_tree_collection as
demonstrated in the vignette.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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