getcaBIOPATHList: Retrieve caBIO path categories containing given genes

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to retrieve caBIO pathway IDss containing the given genes. This function is not supported starting this version due to the termination of the caBig project.

Usage

getcaBIOPATHList(lls)

Arguments

lls	an Entrez gene IDs vector

Details

The given gene IDs should be Entrez gene IDs. And the return list also only contains Entrez gene IDs besides caBIO pathway IDs.

Value

return an Entrez genes ID list, names of the list are caBIO pahtway IDs and elements are Entrez gene IDs.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

See Also

getCategoryList

Examples

## Not run: a <- getcaBIOPATHList('1647')
## Not run: length(a)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.