getREACTOMEPATHTerms: Get Pathway names of given REACTOME PATH_DB IDs

Description Usage Arguments Value Author(s) References Examples

Description

Function to map given REACTOME PATH_DB IDs to Pathway names.

Usage

1
getREACTOMEPATHTerms(pathIDs, allowNA=TRUE)

Arguments

pathIDs

a REACTOME PATHWAY IDs vector

allowNA

logic, to determine whether change unrecognized term names or not

Value

return a REACTOME pathway terms of given REACTOME PATH_DB IDs. If the REACTOME service is not available, the function will stop.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

Examples

1
## Not run: getREACTOMEPATHTerms(c('174143', '453274'))


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