DO: Several data objects related with DO (Disease Ontology) and...

In GeneAnswers: Integrated Interpretation of Genes

Description

Several data objects related with DO (Disease Ontology) and its mapping to genes

Usage

data(DO)

Details

The data file "DO.rda" includes five datasets:

DO.graph.gene: a graphNEL object, which shows the ontology relations of DO

DO.graph.closure.gene: a graphNEL object, whose edges represent the link between a DO term and its offspring ontology terms. Only the DO terms with gene mappings were included.

DO2gene.map: a list show the mapping from DOIDs to genes

gene2DO.map: a list show the mapping from genes to DOIDs

DO.terms: a named character vector. Its names are DOIDs and elements are DO.terms

Examples

data(DO)

datasets <- c("DO.graph.gene", "DO.graph.closure.gene", "DO2gene.map", "gene2DO.map", "DO.terms")
# check the existence of these datasets:
sapply(datasets, exists)

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.