Disease Ontology Annotation List
a standard list, whose names are DOLite IDs and each element contains the gene Entrez IDs belonging to the corresponding DOLite IDs.
~~ reference to a publication or URL from which the data were obtained ~~
Du, P., Feng, G., Flatow, J., Song, J., Holko, M., Kibbe, W.A. and Lin, S.M., (2009) 'From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations', Bioinformatics 25(12):i63-8
Loading required package: igraph Attaching package: 'igraph' The following objects are masked from 'package:stats': decompose, spectrum The following object is masked from 'package:base': union Loading required package: RCurl Loading required package: bitops Loading required package: annotate Loading required package: AnnotationDbi Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:igraph': normalize, union The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: IRanges Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: XML Loading required package: RSQLite Loading required package: MASS Attaching package: 'MASS' The following object is masked from 'package:AnnotationDbi': select Loading required package: Heatplus Loading required package: RColorBrewer Warning messages: 1: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers' 2: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers' $`DOLite:1` 1 2 3 "10801" "10164" "3860" $`DOLite:10` 89 90 91 92 93 94 "6323" "3786" "1139" "57369" "6046" "80258"
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