getcaBIOPATHTerms: Get Pathway names of given REACTOME PATH_DB IDs

In GeneAnswers: Integrated Interpretation of Genes

Description

Function to map given caBIO pathway IDs to Pathway names. This function is not supported starting this version due to the termination of the caBig project.

Usage

getcaBIOPATHTerms(caBIOPATHIDs)

Arguments

caBIOPATHIDs

a caBIO pathway IDs vector

Details

caBIO(Cancer Bioinformatics Infrastructure Objects, https://cabig.nci.nih.gov/tools/cabio) integrates three pathway databases from NCI-Nature curated, Biocarta and Reactome. Therefore, terms could be same from different databases and the source library is added the end of each term.

Value

return the caBIO pathway terms of given caBIO pathway IDs.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

Examples

## Not run: getcaBIOPATHTerms(c('7622', '289', '7173'))

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.