getNextGOIDs: retrieve parents or children GO IDs for given GO IDs

Description Usage Arguments Details Value Author(s) References Examples

Description

A function to retrieve parents or children GO IDs for given IDs with specified filtered IDs.

Usage

1
getNextGOIDs(GOIDs, GOType=c('GO', 'GO.BP', 'GO.CC', 'GO.MF'), remove=TRUE, filterGOIDs=NULL, UP=TRUE)

Arguments

GOIDs

a character GO ID vector

GOType

type of GO IDs, 'GO', 'GO.BP', 'GO.CC' and 'GO.MF'

remove

logic, remove the empty GOIDs in the return values

filterGOIDs

a chacater vector for filtered GO IDs

UP

logic, determine search Parents or Children.

Details

filterGraphIDs is used to only keep nodes in filterGraphIDs.

Value

return a GO IDs list representing a network.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

Examples

1
getNextGOIDs(c('GO:0050794','GO:0034960'))

GeneAnswers documentation built on May 31, 2017, 1:42 p.m.

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