getNextGOIDs: retrieve parents or children GO IDs for given GO IDs

In GeneAnswers: Integrated Interpretation of Genes

Description

A function to retrieve parents or children GO IDs for given IDs with specified filtered IDs.

Usage

getNextGOIDs(GOIDs, GOType=c('GO', 'GO.BP', 'GO.CC', 'GO.MF'), remove=TRUE, filterGOIDs=NULL, UP=TRUE)

Arguments

GOIDs	a character GO ID vector
GOType	type of GO IDs, 'GO', 'GO.BP', 'GO.CC' and 'GO.MF'
remove	logic, remove the empty GOIDs in the return values
filterGOIDs	a chacater vector for filtered GO IDs
UP	logic, determine search Parents or Children.

Details

filterGraphIDs is used to only keep nodes in filterGraphIDs.

Value

return a GO IDs list representing a network.

Author(s)

Gang Feng, Pan Du and Simon Lin

References

Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10

Examples

getNextGOIDs(c('GO:0050794','GO:0034960'))

GeneAnswers documentation built on Nov. 8, 2020, 4:53 p.m.