API for GeneStructureTools
Tools for spliced gene structure manipulation and analysis
| Global functions | |
|---|---|
| DEXSeqIdsToGeneIds | Man page Source code |
| UTR2UTR53 | Man page Source code |
| addBroadTypes | Man page Source code |
| addIntronInTranscript | Man page Source code |
| addSets | Man page Source code |
| alternativeIntronUsage | Man page Source code |
| annotateGeneModel | Man page Source code |
| attrChangeAltSpliced | Man page Source code |
| coordinates | Man page |
| coordinates,whippetDataSet-method | Man page |
| cumsumANDpad | Man page Source code |
| diffSplicingResults | Man page |
| diffSplicingResults,whippetDataSet-method | Man page |
| exonsToTranscripts | Man page Source code |
| filterGtfOverlap | Man page Source code |
| filterWhippetEvents | Man page Source code |
| findDEXexonType | Man page Source code |
| findExonContainingTranscripts | Man page Source code |
| findIntronContainingTranscripts | Man page Source code |
| findJunctionPairs | Man page Source code |
| formatWhippetEvents | Man page Source code |
| getOrfs | Man page Source code |
| getUOrfs | Man page Source code |
| junctions | Man page |
| junctions,whippetDataSet-method | Man page |
| leafcutterTranscriptChangeSummary | Man page Source code |
| makeGeneModel | Man page Source code |
| maxLocation | Man page Source code |
| orfDiff | Man page Source code |
| orfSimilarity | Man page Source code |
| overlapTypes | Man page Source code |
| readCounts | Man page |
| readCounts,whippetDataSet-method | Man page |
| readWhippetDIFFfiles | Man page Source code |
| readWhippetDataSet | Man page Source code |
| readWhippetJNCfiles | Man page Source code |
| readWhippetPSIfiles | Man page Source code |
| removeDuplicateTranscripts | Man page Source code |
| removeSameExon | Man page Source code |
| removeVersion | Man page Source code |
| reorderExonNumbers | Man page Source code |
| replaceJunction | Man page Source code |
| skipExonInTranscript | Man page Source code |
| summariseExonTypes | Man page Source code |
| transcriptChangeSummary | Man page Source code |
| whippetDataSet-class | Man page |
| whippetTranscriptChangeSummary | Man page Source code |
