readWhippetPSIfiles: Read in a list of whippet .psi.gz files and format as a...
In GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description Usage Arguments Value Author(s) See Also Examples

Read in a list of whippet .psi.gz files and format as a data.frame

1	readWhippetPSIfiles(files, attribute = "Total_Reads", maxNA = NA)

`files`	vector of *.psi.gz file names
`attribute`	which attribute from the PSI files to use (Total_Reads, Psi, CI_width)
`maxNA`	maximum number of NA values allowed before a site is removed

data.frame with junction counts for all files

Beth Signal

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, junctions, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetJNCfiles, whippetTranscriptChangeSummary

whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
psiFiles <- whippetFiles[grep(".psi", whippetFiles)]
whippetPSI <- readWhippetPSIfiles(psiFiles)