UTR2UTR53: Annotate UTRs from Gencode GTF as 5' or 3'
In GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Annotate UTRs from Gencode GTF as 5' or 3'
Usage
1
UTR2UTR53(gtf)
Arguments
gtf
GRanges object of the GTF
Value
gtf annotation GRanges object
Author(s)
Beth Signal
See Also
Other gtf manipulation: addBroadTypes,
exonsToTranscripts,
filterGtfOverlap,
removeDuplicateTranscripts,
removeSameExon,
reorderExonNumbers
Examples
1
2
3
4
5
gtfFile <- system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools")
gtf <- rtracklayer::import(gtfFile)
gtf <- UTR2UTR53(gtf)
table(gtf$type)
GeneStructureTools documentation built on Nov. 8, 2020, 6:04 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Annotate UTRs from Gencode GTF as 5' or 3'
Usage
1 | UTR2UTR53(gtf)
|
Arguments
gtf |
GRanges object of the GTF |
Value
gtf annotation GRanges object
Author(s)
Beth Signal
See Also
Other gtf manipulation: addBroadTypes,
exonsToTranscripts,
filterGtfOverlap,
removeDuplicateTranscripts,
removeSameExon,
reorderExonNumbers
Examples
1 2 3 4 5 | gtfFile <- system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools")
gtf <- rtracklayer::import(gtfFile)
gtf <- UTR2UTR53(gtf)
table(gtf$type)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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