readWhippetJNCfiles: Read in a list of whippet .jnc.gz files and format as a...
In GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/readWhippetFiles.R
Description
Read in a list of whippet .jnc.gz files and format as a GRanges object
Usage
1
Arguments
files
vector of *.jnc.gz file names
Value
GRanges object with junctions
Author(s)
Beth Signal
See Also
Other whippet data processing: coordinates,
diffSplicingResults,
filterWhippetEvents,
formatWhippetEvents,
junctions, readCounts,
readWhippetDIFFfiles,
readWhippetDataSet,
readWhippetPSIfiles,
whippetTranscriptChangeSummary
Examples
1
2
3
4
whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
whippetJNC <- readWhippetJNCfiles(jncFiles)
GeneStructureTools documentation built on Nov. 8, 2020, 6:04 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/readWhippetFiles.R
Description
Read in a list of whippet .jnc.gz files and format as a GRanges object
Usage
1 |
Arguments
files |
vector of *.jnc.gz file names |
Value
GRanges object with junctions
Author(s)
Beth Signal
See Also
Other whippet data processing: coordinates,
diffSplicingResults,
filterWhippetEvents,
formatWhippetEvents,
junctions, readCounts,
readWhippetDIFFfiles,
readWhippetDataSet,
readWhippetPSIfiles,
whippetTranscriptChangeSummary
Examples
1 2 3 4 | whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
whippetJNC <- readWhippetJNCfiles(jncFiles)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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