readWhippetJNCfiles: Read in a list of whippet .jnc.gz files and format as a...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/readWhippetFiles.R

Description

Read in a list of whippet .jnc.gz files and format as a GRanges object

Usage

1

Arguments

files

vector of *.jnc.gz file names

Value

GRanges object with junctions

Author(s)

Beth Signal

See Also

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, formatWhippetEvents, junctions, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetPSIfiles, whippetTranscriptChangeSummary

Examples

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whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
jncFiles <- whippetFiles[grep(".jnc", whippetFiles)]
whippetJNC <- readWhippetJNCfiles(jncFiles)

GeneStructureTools documentation built on Nov. 8, 2020, 6:04 p.m.