formatWhippetEvents: Format Whippet co-ordinates as a GRanges object
In GeneStructureTools: Tools for spliced gene structure manipulation and analysis

Description Usage Arguments Value Author(s) See Also Examples

Format Whippet co-ordinates as a GRanges object

1	formatWhippetEvents(whippet)

whippet

data.frame containing event location information. May be generated by readWhippetDIFFfiles()

GRanges object with events

Beth Signal

Other whippet data processing: coordinates, diffSplicingResults, filterWhippetEvents, junctions, readCounts, readWhippetDIFFfiles, readWhippetDataSet, readWhippetJNCfiles, readWhippetPSIfiles, whippetTranscriptChangeSummary

whippetFiles <- list.files(system.file("extdata","whippet/",
package = "GeneStructureTools"), full.names = TRUE)
diffFiles <- whippetFiles[grep(".diff", whippetFiles)]
whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)
whippetCoords <- formatWhippetEvents(whippetDiffSplice)