exonsToTranscripts: Convert an exon-level gtf annotation to a transcript-level...
In GeneStructureTools: Tools for spliced gene structure manipulation and analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Convert an exon-level gtf annotation to a transcript-level gtf annotation
Usage
1
exonsToTranscripts(exons)
Arguments
exons
GRanges object with exons
Value
GRanges object with transcripts
Author(s)
Beth Signal
See Also
Other gtf manipulation: UTR2UTR53,
addBroadTypes,
filterGtfOverlap,
removeDuplicateTranscripts,
removeSameExon,
reorderExonNumbers
Examples
1
2
3
4
5
6
gtf <- rtracklayer::import(system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools"))
exons <- gtf[gtf$type=="exon" & gtf$transcript_id=="ENSMUST00000126412.1"]
exons
transcripts <- exonsToTranscripts(exons)
transcripts
GeneStructureTools documentation built on Nov. 8, 2020, 6:04 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Convert an exon-level gtf annotation to a transcript-level gtf annotation
Usage
1 | exonsToTranscripts(exons)
|
Arguments
exons |
GRanges object with exons |
Value
GRanges object with transcripts
Author(s)
Beth Signal
See Also
Other gtf manipulation: UTR2UTR53,
addBroadTypes,
filterGtfOverlap,
removeDuplicateTranscripts,
removeSameExon,
reorderExonNumbers
Examples
1 2 3 4 5 6 | gtf <- rtracklayer::import(system.file("extdata","example_gtf.gtf",
package = "GeneStructureTools"))
exons <- gtf[gtf$type=="exon" & gtf$transcript_id=="ENSMUST00000126412.1"]
exons
transcripts <- exonsToTranscripts(exons)
transcripts
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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