Files in GeneStructureTools

Tools for spliced gene structure manipulation and analysis

README.md R/longestORF.R R/quickAnalysis.R R/compareTranscripts.R R/IntronRetention.R R/classes.R R/leafCutter.R R/AltSplicingJunctionSupported.R R/ExonSkipping.R R/UTR2UTR53.R R/OverlapFunctions.R R/readWhippetFiles.R R/plotGvisTracks.R vignettes/Vignette.Rmd man/readCounts-methods.Rd man/attrChangeAltSpliced.Rd man/filterWhippetEvents.Rd man/orfSimilarity.Rd man/filterGtfOverlap.Rd man/annotateGeneModel.Rd man/summariseExonTypes.Rd man/getOrfs.Rd man/findIntronContainingTranscripts.Rd man/getUOrfs.Rd man/orfDiff.Rd man/exonsToTranscripts.Rd man/readWhippetDIFFfiles.Rd man/whippetTranscriptChangeSummary.Rd man/formatWhippetEvents.Rd man/addIntronInTranscript.Rd man/makeGeneModel.Rd man/UTR2UTR53.Rd man/leafcutterTranscriptChangeSummary.Rd man/readWhippetDataSet.Rd man/findJunctionPairs.Rd man/reorderExonNumbers.Rd man/coordinates-methods.Rd man/removeSameExon.Rd man/junctions-methods.Rd man/findDEXexonType.Rd man/skipExonInTranscript.Rd man/removeVersion.Rd man/cumsumANDpad.Rd man/DEXSeqIdsToGeneIds.Rd man/readWhippetPSIfiles.Rd man/replaceJunction.Rd man/addBroadTypes.Rd man/findExonContainingTranscripts.Rd man/addSets.Rd man/overlapTypes.Rd man/maxLocation.Rd man/diffSplicingResults-methods.Rd man/alternativeIntronUsage.Rd man/removeDuplicateTranscripts.Rd man/transcriptChangeSummary.Rd man/whippetDataSet-class.Rd man/readWhippetJNCfiles.Rd inst/doc/Vignette.Rmd inst/doc/Vignette.R inst/extdata/leafviz2table.R inst/extdata/dexseq_process.R