getIMPCDataset: Method "getIMPCDataset"

In IMPCdata: Retrieves data from IMPC database

Description

Returns the IMPC dataset for a knockout line for a specified combination of parameter, procedure, pipeline, phenotyping centre, allele and strain (genetic background) that is used within the data analysis pipeline implemented on the IMPC database.

Usage

    getIMPCDataset(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL,
            AlleleID=NULL,StrainID=NULL)

Arguments

PhenCenterName	IMPC phenotyping center; mandatory argument
PipelineID	IMPC pipeline ID; mandatory argument
ProcedureID	IMPC procedure ID; mandatory argument
ParameterID	IMPC parameter ID; mandatory argument
AlleleID	IMPC allele ID; mandatory argument
StrainID	IMPC strain ID; optional argument

Value

Returns the IMPC dataset as a data frame. - metadata_group string a string indicating a group of experimental and control mice that have the same metadata (see also biological_sample_group)

- metadata list of strings list showing all relevant metadata in effect when the data was collected

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    df <- getIMPCDataset("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_008_001","MGI:4433526")

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.