getZygosities: Method "getZygosities"
In IMPCdata: Retrieves data from IMPC database

Description Usage Arguments Value Author(s) Examples

Returns the list of zygosities (homozygous, heterozygous and hemizygous) for mice that were measured for a gene/allele for a specificed combination of parameter, procedure, pipeline and phenotyping center.

1 2	getZygosities(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL, StrainID=NULL,GeneID=NULL, AlleleID=NULL)

`PhenCenterName`	IMPC phenotyping center; mandatory argument
`PipelineID`	IMPC pipeline ID; mandatory argument
`ProcedureID`	IMPC procedure ID; mandatory argument
`ParameterID`	IMPC parameter ID; mandatory argument
`StrainID`	IMPC strain ID; optional argument
`GeneID`	IMPC gene ID; optional argument
`AlleleID`	IMPC allele ID; optional argument

Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Natalja Kurbatova, Jeremy Mason

    listZygosities  <- getZygosities("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001",GeneID="MGI:1194894")
    for (zygosityIndex in 1:length(listZygosities)) {
        print(listZygosities[zygosityIndex])
    }