getAlleles: Method "getAlleles"
In IMPCdata: Retrieves data from IMPC database

Description Usage Arguments Value Author(s) Examples

Returns alleles (MGI IDs or temporary IDs if the MGI ID is not assigned yet) that are processed for a specified combination of parameter, procedure, pipeline and phenotyping center. Temporary allele ID starts with "NULL".

1 2	getAlleles(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL, ParameterID=NULL,StrainID=NULL)

`PhenCenterName`	IMPC phenotyping center; mandatory argument
`PipelineID`	IMPC pipeline ID; mandatory argument
`ProcedureID`	IMPC procedure ID; mandatory argument
`ParameterID`	IMPC parameter ID; mandatory argument
`StrainID`	IMPC strain ID; optional argument

Returns the list of IMPC alleles (IDS of alleles) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Natalja Kurbatova, Jeremy Mason

    listAlleles  <- getAlleles("RBRC","IMPC_001","IMPC_GRS_001","IMPC_GRS_003_001")
    for (alleleIndex in 1:min(length(listAlleles), 5)) {
        print(paste(listAlleles[alleleIndex],"-",
                        getName("allele_accession_id","allele_symbol",
                        listAlleles[alleleIndex])))
    }