getIMPCTable: Method "getIMPCTable"

In IMPCdata: Retrieves data from IMPC database

Description

Returns the IMPC dataset. There are optional arguments to subset the IMPC dataset. Be aware that without filters this file output will be very large and the query will be time intensive.

Usage

    getIMPCTable(fileName="IMPCdata",PhenCenterName=NULL, PipelineID=NULL, ProcedureID=NULL, ParameterID=NULL, 
            AlleleID=NULL, StrainID=NULL, multipleFiles=TRUE,recordsPerFile=10000)

Arguments

fileName	name of the file where to save resulting table with IMPC objects; mandatory argument; default value is set to 'IMPCdata'
PhenCenterName	IMPC phenotyping center
PipelineID	IMPC pipeline ID
ProcedureID	IMPC procedure ID
ParameterID	IMPC parameter ID
AlleleID	allele ID
StrainID	strain ID
multipleFiles	flag: "FALSE" value to get all records into one specified file; "TRUE" value (default) to split records across multiple files named starting with 'fileName'
recordsPerFile	number that specifies how many records to write into one file; default value is 10000

Value

Returns the IMPC dataset.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    getIMPCTable("./IMPCData_WTSI","WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001","MGI:4431644")

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.