getParameters: Method "getParameters"

Description Usage Arguments Value Author(s) Examples

View source: R/PhenObjects.R

Description

Returns the list of parameters (IMPReSS IDs) that are measured within specified procedure for a pipeline run by phenotyping center.

Usage

1
    getParameters(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

Value

Returns the list of IMPC parameters (IDS of parameters) that are measured within specified procedure in the pipeline run by phenotyping center.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

1
2
3
4
5
    listParameters  <- getParameters("WTSI","MGP_001","IMPC_CBC_001")
    for (parameterIndex in 1:min(length(listParameters), 5)) {
        print(paste(listParameters[parameterIndex],"-",
                        getName("parameter_stable_id","parameter_name",listParameters[parameterIndex])))
    }

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.