getGenes: Method "getGenes"

In IMPCdata: Retrieves data from IMPC database

Description

Returns the genes (MGI IDs) that are reported for a specified combination of parameter, procedure, pipeline and phenotyping center.

Usage

    getGenes(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL,StrainID=NULL)

Arguments

PhenCenterName	IMPC phenotyping center; mandatory argument
PipelineID	IMPC pipeline ID; mandatory argument
ProcedureID	IMPC procedure ID; mandatory argument
ParameterID	IMPC parameter ID; mandatory argument
StrainID	IMPC strain ID; optional argument

Value

Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    listGenes  <- getGenes("RBRC","IMPC_001","IMPC_GRS_001","IMPC_GRS_003_001")
    for (geneIndex in 1:min(length(listGenes), 5)) {
        print(paste(listGenes[geneIndex],"-",
                        getName("gene_accession_id","gene_symbol",listGenes[geneIndex])))
    }

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.