getPipelines: Method "getPipelines"

In IMPCdata: Retrieves data from IMPC database

Description

Returns the list of IMPC pipelines (IMPReSS IDs) that are run by specified phenotyping center.

Usage

    getPipelines(PhenCenterName=NULL,excludeLegacyPipelines=TRUE)

Arguments

PhenCenterName	IMPC phenotyping center; mandatory argument
excludeLegacyPipelines	flag: "FALSE" value to get all pipelines including legacy pipelines; "TRUE" value (default) to get current IMPC pipelines excluding legacy pipelines

Value

Returns the list of IMPC pipelines (IDS of pipelines) that are run by specified phenotyping center.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    listPipelines  <- getPipelines("WTSI")
    for (pipelineIndex in 1:length(listPipelines)) {
        print(paste(listPipelines[pipelineIndex],"-",
                    getName("pipeline_stable_id","pipeline_name",listPipelines[pipelineIndex])))
    }

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.