getStrains: Method "getStrains"

In IMPCdata: Retrieves data from IMPC database

Description

Returns the genetic background (MGI IDs) from which the knockout mice were derived for a specific combination of pipeline, procedure and paramater for a phenotyping center.

Usage

    getStrains(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL)

Arguments

PhenCenterName	IMPC phenotyping center; mandatory argument
PipelineID	IMPC pipeline ID; mandatory argument
ProcedureID	IMPC procedure ID; mandatory argument
ParameterID	IMPC parameter ID; mandatory argument

Value

Returns the list of IMPC strains (IDS of strains) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    listStrains  <- getStrains("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001")
    for (strainIndex in 1:length(listStrains)) {
        print(paste(listStrains[strainIndex],"-",
                        getName("strain_accession_id","strain_name",listStrains[strainIndex])))
    }

IMPCdata documentation built on Nov. 8, 2020, 8:17 p.m.