API for KCsmart
Multi sample aCGH analysis package using kernel convolution
| Global functions | |
|---|---|
| .add2spmc | Source code |
| .checkMirrorLocs | Source code |
| .comparativeKcPerms | Source code |
| .comparativeKcSiggenes | Source code |
| .convertCGHbase | Source code |
| .findCutoffByFdr | Source code |
| .findPeaks | Source code |
| .findPeaks_old | Source code |
| .findfdrcutoff | Source code |
| .getPeaks | Source code |
| .getRegions | Source code |
| .getSigRegions | Source code |
| .makePermutations | Source code |
| .mirrorData | Source code |
| .permutedSpm | Source code |
| .samplePointMatrix | Source code |
| .samplePointMatrixOld | Source code |
| .snr | Source code |
| .spm2spmc | Source code |
| .varr | Source code |
| KCData-class | Man page |
| KCsmart | Man page |
| KCsmart-package | Man page |
| KcghData-class | Man page |
| KcghDataMirror-class | Man page |
| KcghDataSplit-class | Man page |
| KcghDataSum-class | Man page |
| [,probeAnnotation-method | Man page |
| [[,KCData-method | Man page |
| [[<-,KCData-method | Man page |
| calcSpm | Man page Source code |
| calcSpmCollection | Man page Source code |
| compKc-class | Man page |
| compKcSigRegions-class | Man page |
| compareSpmCollection | Man page Source code |
| findSigLevelFdr | Man page Source code |
| findSigLevelTrad | Man page Source code |
| getSigRegionsCompKC | Man page Source code |
| getSigSegments | Man page Source code |
| hsMirrorLocs | Man page |
| hsSampleData | Man page |
| idPoints | Man page Source code |
| initialize,KcghData-method | Man page |
| initialize,KcghDataMirror-method | Man page |
| initialize,KcghDataSplit-method | Man page |
| initialize,KcghDataSum-method | Man page |
| initialize,compKc-method | Man page |
| initialize,probeAnnotation-method | Man page |
| length,KCData-method | Man page |
| mmMirrorLocs | Man page |
| plot | Man page |
| plot,compKc,missing-method | Man page |
| plot,compKc-method | Man page |
| plot,samplePointMatrix,missing-method | Man page |
| plot,scaleSpace,missing-method | Man page |
| plotScaleSpace | Man page Source code |
| probeAnnotation-class | Man page |
| samplePointMatrix-class | Man page |
| show,compKc-method | Man page |
| show,compKcSigRegions-method | Man page |
| show,samplePointMatrix-method | Man page |
| show,sigSegments-method | Man page |
| show,spmCollection-method | Man page |
| sigSegments-class | Man page |
| sort,KcghData-method | Man page |
| sort,KcghDataSum-method | Man page |
| spmCollection-class | Man page |
| unlist,KCData-method | Man page |
| write.table | Man page |
| write.table,compKcSigRegions-method | Man page |
| write.table,sigSegments-method | Man page |
