samplePointMatrix-class: Sample point matrix

In KCsmart: Multi sample aCGH analysis package using kernel convolution

Description

A sample point matrix resulting from a call to calcSpm

Objects from the Class

Objects can not be created by the user directly but rather through calcSpm.

Slots

totalLength:

The total length of the sample point matrix, measures in sample points

maxy:

The maximum KC score attained over the sample point matrix

miny:

The minimum KC score attained over the sample point matrix

sampleDensity:

The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.

sigma:

The sigma used for the kernel to calculate the sample point matrix.

mirrorLocs:

The mirror locations list used to calculate the sample point matrix

probeAnnotation:

The original probe annotation from the input data.

data:

The sample point matrix data points in the form of a list where each list element represents a chromosome.

Methods

plot

signature(x = "samplePointMatrix"): ...

show

signature(object = "samplePointMatrix"): ...

Examples

showClass("samplePointMatrix")

KCsmart documentation built on Nov. 8, 2020, 7:08 p.m.