compKc-class: KC smart comparative

In KCsmart: Multi sample aCGH analysis package using kernel convolution

Description

A matrix containing the results from a call to compareSpmCollection

Objects from the Class

Objects can not be created by the user directly but rather through compareSpmCollection.

Slots

spmCollection:

The original spmCollection used to compare the samples

method:

The method used to create the null distribution

siggenesResult:

In case of the siggenes method being used, a siggenes object containing the fdr-cutoff table

snrResult:

In case of the signal-noise/permutation based method being used, the signal-to-noise data and a matrix with the (class based) permutations

Methods

initialize

signature(.Object = "compKc"): Internal use only

plot

signature(x = "compKc"): ...

show

signature(object = "compKc"): ...

Examples

showClass("compKc")

KCsmart documentation built on Nov. 8, 2020, 7:08 p.m.