API for LowMACA
LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Global functions
.ClustalChecks Source code
.MAD Source code
.PerlModuleChecks Source code
.Trident_Score Source code
.alnWeights Source code
.checkGene_to_geneID Source code
.clustalMatrix Source code
.clustalOAlign Source code
.filterMAlign Source code
.findPerl Source code
.getGeneMutations Source code
.getLocalGeneMutations Source code
.makeNullProfile Source code
.makeUniformModel Source code
.onLoad Source code
.profileDensity Source code
.profileEntropy Source code
.sampleUnifEntropyL Source code
.sampleUnifEntropyL.old Source code
.scoreMatrix Source code
.shannon Source code
BLOSUM62 Man page
LowMACA Man page
LowMACA-class Man page
LowMACA-package Man page
LowMACA_AML Man page
alignSequences Man page
alignSequences,LowMACA-method Man page
allPfamAnalysis Man page Source code
bpAll Man page
bpAll,LowMACA-method Man page
entropy Man page
entropy,LowMACA-method Man page
getMutations Man page
getMutations,LowMACA-method Man page
lfm Man page
lfm,LowMACA-method Man page
lfmSingleSequence Man page
lfmSingleSequence,LowMACA-method Man page
lmAlignment Man page
lmAlignment,LowMACA-method Man page
lmEntropy Man page
lmEntropy,LowMACA-method Man page
lmMutations Man page
lmMutations,LowMACA-method Man page
lmObj Man page
lmParams Man page
lmParams,LowMACA-method Man page
lmParams<- Man page
lmParams<-,LowMACA-method Man page
lmPlot Man page
lmPlot,LowMACA-method Man page
lmPlotSingleSequence Man page
lmPlotSingleSequence,LowMACA-method Man page
mapMutations Man page
mapMutations,LowMACA-method Man page
newLowMACA Man page Source code
nullProfile Man page
nullProfile,LowMACA-method Man page
parallelize Man page
parallelize,LowMACA-method Man page
parallelize<- Man page
parallelize<-,LowMACA-method Man page
protter Man page
protter,LowMACA-method Man page
setup Man page
setup,LowMACA-method Man page
show,LowMACA-method Man page
showTumorType Man page Source code
LowMACA documentation built on Oct. 31, 2019, 7:02 a.m.