Show Mutation Data Contained in a LowMACA object

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Description

Method for objects of class LowMACA. It can show the mutation data contained within the LowMACA object that has been retrieved from getMutations method.

Usage

1
lmMutations(object)

Arguments

object

object of class LowMaca

Value

A list containing the following elements:

  • data a data.frame describing the mutations on every genes and their effect the amino acids they belong to

  • freq a data.frame containing the absolute number of mutated patients by gene and selected tumor types (this is useful to explore the mutational landscape of your genes in the different tumor types)

  • aligned a matrix where rows represent proteins/pfam, and columns report the number of mutations on every position of the consensus

Author(s)

Stefano de Pretis, Giorgio Melloni

See Also

getMutations

Examples

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