mapMutations is a method for the class LowMACA
that re-maps the mutations on a sequence to the relative position in a consensus sequence.
an object of class LowMACA
Every position in the consensus alignement correspond to different positions
in the single aligned sequences. The mutations are mapped according to this
scheme that can be evinced from the slot
mapMutations must be called after
An object of class LowMACA with an update in the slot
mapMutations add a object named
aligned of class matrix in this slot
that represents the absolute number of mutations in each sequence/position
in the consensus as a matrix.
Stefano de Pretis , Giorgio Melloni
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