Example of a LowMACA object

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Description

A data frame containing TCGA AML data in the format accepted by LowMACA

Usage

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data("LowMACA_AML")

Format

A data.frame of 8 columns:

  1. Entrez gene ID number

  2. Gene_Symbol HGNC official gene symbol

  3. Amino_Acid_Letter original amino acid letter in the position of the mutation

  4. Amino_Acid_Position position of the mutation relative to the protein

  5. Amino_Acid_Change amino acid change in hgvs format, like G12V

  6. Mutation_Type classification of mutation according to MAF format.

  7. Sample name of the sample where the mutation was found

  8. Tumor_Type type of tumor, if applicable

Source

Adapted from TCGA ftp repository

See Also

MAF format specification HGVS

Examples

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#Load LowMACA_AML and show its structure
data(LowMACA_AML)
str(LowMACA_AML)