plotFeature: Plot values of a feature

In MEAL: Perform methylation analysis

Description

Plot values of a feature splitted by one or two variables.

Usage

plotFeature(set, feat, variables = colnames(pheno)[1], betas = TRUE)

Arguments

set	ExpressionSet, GenomicRatioSet or SummarizedExperiment.
feat	Numeric with the index of the feature or character with its name.
variables	Character vector with the names of the variables to be used in the splitting. Two variables is the maximum allowed.
betas	If set is a GenomicRatioSet, should beta values be used? (Default: TRUE)

Value

A plot is generated on the current graphics device.

Examples

if (require(minfiData)){
set <- ratioConvert(mapToGenome(MsetEx[1:10,]))
 plotFeature(set, 1, variables = "Sample_Group")
 }

MEAL documentation built on Feb. 3, 2021, 2 a.m.