getProbeResults: Obtain probe results from a 'ResultSet'

In MEAL: Perform methylation analysis

Description

It computes the statistics from the MArrayLM computed with DiffMeanAnalysis or DiffVarAnalysis. This function allows to specify the contrasts and to get F-statistics for a group of variables.

Usage

getProbeResults(
  object,
  rid = "DiffMean",
  coef = 2,
  contrast = NULL,
  fNames = c("chromosome", "start"),
  ...
)

Arguments

object	ResultSet
rid	Name of the results: "DiffMean" for mean differences, "DiffVar" for variance differences. (Default: DiffMean)
coef	Number of the coefficient used to compute the statistics. If a vector is supplied, F-statistics evaluating the global effect of the coefficients are computed. (Default: 2).
contrast	Matrix of contrasts
fNames	Names of the columns of object fData that will be added to the results data.frame.
...	Further arguments passed to getAssociation.

Value

data.frame with the probe results.

MEAL documentation built on Feb. 3, 2021, 2 a.m.