Files in MEAL
Perform methylation analysis

DESCRIPTION
NAMESPACE
NEWS
R
R/0_AllClasses.R R/1_AllGenerics.R R/AnalysisRegionResults_Constructor.R R/AnalysisRegionResults_SettersGetters.R R/AnalysisRegionResults_plotRDA.R R/AnalysisRegionResults_plotRegionR2.R R/AnalysisRegionResults_show.R R/AnalysisRegionResults_topRDAhits.R R/AnalysisResults_Constructor.R R/AnalysisResults_SettersGetters.R R/AnalysisResults_exportResults.R R/AnalysisResults_plotEWAS.R R/AnalysisResults_plotQQ.R R/AnalysisResults_plotRegion.R R/AnalysisResults_plotVolcano.R R/AnalysisResults_show.R R/DAPipeline.R R/DAProbe.R R/DARegion.R R/DARegionAnalysis.R R/Defunct.R R/MEAL.R R/RDAset.R R/SNPsforCPG.R R/calculateRelevantSNPs.R R/changeVectorType.R R/computeRDAR2.R R/correlationMethExprs.R R/correlationMethSNPs.R R/createModel.R R/createRanges.R R/explainedVariance.R R/filterResults.R R/filterSet.R R/normalSNP.R R/plotBestFeatures.R R/plotFeature.R R/plotLM.R R/prepareMethylationSet.R R/preparePhenotype.R
build
build/vignette.rds
inst
inst/NEWS.Rd
inst/doc
inst/doc/MEAL.R inst/doc/MEAL.Rmd
inst/doc/MEAL.html
inst/doc/caseExample.R inst/doc/caseExample.Rmd
inst/doc/caseExample.html
man
man/AnalysisRegionResults-class.Rd man/AnalysisResults-class.Rd man/DAPipeline.Rd man/DAProbe.Rd man/DARegion.Rd man/DARegionAnalysis.Rd man/MEAL-defunct.Rd man/MEAL.Rd man/RDAset.Rd man/calculateRelevantSNPs.Rd man/computeRDAR2.Rd man/correlationMethExprs.Rd man/correlationMethSNPs.Rd man/createRanges.Rd man/explainedVariance.Rd man/exportResults-methods.Rd man/filterSet-methods.Rd man/getGeneVals-methods.Rd man/normalSNP.Rd man/plotBestFeatures.Rd man/plotEWAS-methods.Rd man/plotFeature.Rd man/plotLM.Rd man/plotQQ-methods.Rd man/plotRDA-methods.Rd man/plotRegion-methods.Rd man/plotRegionR2-methods.Rd man/plotVolcano-methods.Rd man/prepareMethylationSet.Rd man/preparePhenotype.Rd man/topRDAhits-methods.Rd
tests
tests/testthat
tests/testthat.R tests/testthat/test_01createSet.R tests/testthat/test_02preparePhenotype.R tests/testthat/test_03createModel.R tests/testthat/test_04filters.R tests/testthat/test_05probeAnalysis.R tests/testthat/test_06regionAnalysis.R tests/testthat/test_07pipeline.R tests/testthat/test_08rangeAnalysis.R tests/testthat/test_09explainedVariance.R tests/testthat/test_10exportResults.R tests/testthat/test_11plotting.R tests/testthat/test_12RDA.R tests/testthat/test_13SNPsCalculation.R tests/testthat/test_14getGenes.R tests/testthat/test_15correlationMethExpr.R
vignettes
vignettes/MEAL.Rmd vignettes/caseExample.Rmd
vignettes/vignette.bib
MEAL documentation built on May 31, 2017, 11:16 a.m.