plotRDA: Plot RDA results
In MEAL: Perform methylation analysis

Description Usage Arguments Value Examples

Plot RDA results

1	plotRDA(object, pheno = data.frame(), n_feat = 5, main = "RDA plot", alpha = 1)

`object`	`ResultSet`
`pheno`	data.frame with the variables used to color the samples.
`n_feat`	Numeric with the number of cpgs to be highlighted. Default: 5.
`main`	Character with the plot title.
`alpha`	Numeric with the alpha level for colour transparance. Default: 1; no transparency.

A plot is generated on the current graphics device.

if (require(minfiData)){
set <- ratioConvert(mapToGenome(MsetEx[1:10,]))
model <- model.matrix(~set$sex)
rda <- runRDA(set, model)
plotRDA(rda, pheno = data.frame(factor(set$sex)))
}