runBlockFinder: Run blockFinder

Description Usage Arguments Details Value See Also

View source: R/runBlockFinder.R

Description

Run blockFinder

Usage

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runBlockFinder(
  set,
  model,
  coefficient = 2,
  blockfinder_cutoff = 0.1,
  num_permutations = 0,
  resultSet = FALSE,
  verbose = FALSE,
  ...
)

Arguments

set

GenomicRatioSet, eSet derived object or SummarizedExperiment

model

Model matrix or formula to get model matrix from set.

coefficient

Numeric with the column of model matrix used in the analysis. (Default: 2)

blockfinder_cutoff

Numeric with the minimum cutoff to include a probe in a block. (Default: 0.1)

num_permutations

Numeric with the number of permutations run to compute the blocks p-value. (Default: 0)

resultSet

Should results be encapsulated in a resultSet? (Default: TRUE)

verbose

Logical value. Should the function be verbose? (Default: FALSE)

...

Further arguments passed to blockFinder.

Details

This function has been deprecated and will be defunct in the new version.

Value

data.frame or resultSet with the result of blockFinder

See Also

blockFinder


MEAL documentation built on Feb. 3, 2021, 2 a.m.