runDMRcate: Run DMRcate

Description Usage Arguments Details Value See Also

View source: R/runDMRcate.R

Description

Run DMRcate

Usage

1
runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)

Arguments

set

GenomicRatioSet, eSet derived object or SummarizedExperiment

model

Model matrix or formula to get model matrix from set.

coefficient

Numeric with the column of model matrix used in the analysis. (Default: 2)

resultSet

Should results be encapsulated in a resultSet? (Default: TRUE)

...

Further arguments passed to cpg.annotate or dmrcate.

Details

This function has been deprecated and will be defunct in the new version.

Value

data.frame or resultSet with the result of bumphunter

See Also

dmrcate, cpg.annotate


MEAL documentation built on Feb. 3, 2021, 2 a.m.