visualize_continuous_discover: Visualization of the clustered network for the...
In MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Description
Usage
Arguments
Value
View source: R/helpers_continuous_discover.R
Description
Visualization of the clustered network for the continuous.discover function
Usage
1
2
visualize_continuous_discover(graph_pc, membership_loading,
size_communities, plot_size_cutoff, short_names, output)
Arguments
graph_pc
the full pc network constructed from correlated PCs
membership_loading
membership of PC loadings from community discovery
size_communities
ordered (largest to smallest) size of the identified
communities
plot_size_cutoff
cluster size cutoff (for cluster to be included in
the visualized PC network)
short_names
shorter names of the loadings
output
output file name
Value
an invisible list of the subsetted network and memberships (to
reproduce the plot)
MMUPHin documentation built on April 9, 2021, 6:01 p.m.
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Description Usage Arguments Value
View source: R/helpers_continuous_discover.R
Description
Visualization of the clustered network for the continuous.discover function
Usage
1 2 | visualize_continuous_discover(graph_pc, membership_loading,
size_communities, plot_size_cutoff, short_names, output)
|
Arguments
graph_pc |
the full pc network constructed from correlated PCs |
membership_loading |
membership of PC loadings from community discovery |
size_communities |
ordered (largest to smallest) size of the identified communities |
plot_size_cutoff |
cluster size cutoff (for cluster to be included in the visualized PC network) |
short_names |
shorter names of the loadings |
output |
output file name |
Value
an invisible list of the subsetted network and memberships (to reproduce the plot)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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