areaEnrich: aREA.enrich Compute aREA enrichment between all pairwise...

Description Usage Arguments Value

View source: R/diggit.r

Description

aREA.enrich Compute aREA enrichment between all pairwise combinations of VIPER proteins and gene-level events

Usage

1
areaEnrich(events.mat, vipermat, event.type, verbose)

Arguments

events.mat

A Binary 0/1 matrix with columns as samples, and rows as proteins

vipermat

A VIPER network of inferred activity scores with columns as samples, and rows as proteins

event.type

Name of the event type for printing purposes

verbose

whether to print extra progress statements

Value

A matrix of enrichment scores with rows as event/gene names and columns as VIPER protein names


MOMA documentation built on Nov. 8, 2020, 6:01 p.m.